Epidemiological analysis with R
Riga Stradins University Workshop, July 2020
Lecturer: Sergio Uribe, Assoc Prof, PhD Riga Stradins University, July 2020 Required packages
pacman::p_load( car, broom, tidyverse, ggfortify, mosaic, huxtable, jtools, latex2exp, pubh, sjlabelled, sjPlot, sjmisc ) theme_set(sjPlot::theme_sjplot2(base_size = 10)) theme_update(legend.position = "top") # options('huxtable.knit_print_df' = FALSE) options('huxtable.knit_print_df_theme' = theme_article) options('huxtable.autoformat_number_format' = list(numeric = "%5.2f")) knitr::opts_chunk$set(collapse = TRUE, comment = NA) Epidemiological Descriptive Analysis Onchocerciasis in Sierra Leone.
data(Oncho) Oncho %>% head() idmfareaagegrpsexmfloadlesions 1InfectedSavannah20-39Female1No 2InfectedRainforest40+Male3No 3InfectedSavannah40+Female1No 4Not-infectedRainforest20-39Female0No 5Not-infectedSavannah40+Female0No 6Not-infectedRainforest20-39Female0No A two-by-two contingency table:
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